d-PBWT: dynamic positional Burrows–Wheeler transform
نویسندگان
چکیده
منابع مشابه
Efficient haplotype matching and storage using the positional Burrows–Wheeler transform (PBWT)
MOTIVATION Over the last few years, methods based on suffix arrays using the Burrows-Wheeler Transform have been widely used for DNA sequence read matching and assembly. These provide very fast search algorithms, linear in the search pattern size, on a highly compressible representation of the dataset being searched. Meanwhile, algorithmic development for genotype data has concentrated on stati...
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Given an AWGN channel, we look at the problem of designing an optimal binary uncoded communication system for transmitting blocks of binary symbols generated by a stationary source with memory modelled by a Markov chain (MC) or a hidden Markov model (HMM). The goal is to minimize the average SNR required for a given block error rate. The particular case where the binary source is memoryless wit...
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The Burrows-Wheeler Transform is a building block for many text compression applications and self-index data structures. It reorders the letters of a text T to obtain a new text bwt(T ) which can be better compressed. This forward transform has been intensively studied over the years, but a major problem still remains: bwt(T ) has to be entirely recomputed whenever T is modified. In this articl...
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Background: Benign paroxysmal positional vertigo (BPPV) is linked to vitamin D deficiency. This clinical trial aimed to determine the influence of vitamin D supplementation on intensity of BPPV. Methods: The study population was selected consecutively and the diagnosis of BPPV was made by history and clinical examination and exclusion of other conditions. Intensity of BPVV was assessed based...
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OBJECTIVES The objective of the present study was to examine the effects of serum 25-hydroxyvitamin D concentrations on patients diagnosed with benign paroxysmal positional vertigo (BPPV) on BPPV recurrence. STUDY DESIGN Case series. METHODS A retrospective review of 232 patients diagnosed with BPPV visiting the clinic between June 2014 and June 2015 was performed. All patients underwent a ...
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ژورنال
عنوان ژورنال: Bioinformatics
سال: 2021
ISSN: 1367-4803,1460-2059
DOI: 10.1093/bioinformatics/btab117